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A new support project I've started - think of it as a giant notepad.


Publications

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PhD Thesis:

Published Papers:

  • AB Noske, AJ Costin, GP Morgan and BJ Marsh, Expedited approaches to whole cell electron tomography and organelle mark-up in situ in high-pressure frozen pancreatic islets, (2007) J Struct Biol. **
    .....(pubmed website) | (direct download)


  • T McComb, O Cairncross, AB Noske, DL Wood, BJ Marsh and MA Ragan. IllouraTM: a software tool for analysis, visualization and semantic querying of cellular and other spatial biological data, (2009) Bioinformatics. 25:1208-1210.
    .....(pubmed website)

Invited Book Chapter:

  • AB Noske, BJ Marsh. Mapping the beta cell in 3D at the nanoscale using novel cellular electron tomography and computational approaches. (2011) BetaSys - Systems biology of regulated exocytosis in pancreatic beta cells. Springer-Verlag. Chapter 9. ***
    .....(springer website)

Submitted Papers:

  • AB Noske, GP Morgan, AJ Costin, J Galea, MA Ragan, BJ Marsh. Estimating section collapse of cellular tomograms by analysis of roughly spherical compartments. J Struct Biol. (submitted: Dec 2009).
  • AB Noske, J Galea, AJ Costin, GP Morgan, MA Ragan, BJ Marsh. Efficient segmentation of cellular tomograms using novel interpolation techniques. J Struct Biol. (submitted: Dec 2009)..

Invited Review:

  • AB Noske, O Cairncross, G Johnson, AJ Costin, GP Morgan, MA Ragan and BJ Marsh. New approaches for the quantitative visualization and analysis of mammalian membrane traffic using 3D spatial image data derived from high-resolution cellular tomograms. Traffic.

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Invited Talks (*Competitively Selected):

  • 2007 - Winter School in Mathematical & Computational Biology, ARC Centre in Bioinformatics & University of Queensland, Brisbane, Australia
  • 2007 - Boulder Laboratory for 3D Electron Microscopy of Cells, Dept. of Molecular, Cellular & Developmental Biology, University of Colorado, Boulder, CO, USA
  • 2008 - 'Systems Biology' symposium, Queenstown Molecular Biology meeting, Queenstown, New Zealand - 4/9/2008 ***
  • 2008 - 'Mitochondrial Imaging and Dynamics' symposium, AussieMit workshop, Monash University, Melbourne, Australia - 27/11/2008 **
  • 2009 - 'Pre- and post-processing methods for segmentation, denoising and feature detection of ET datasets' session, Asia-Pacific Congress on Electron Tomography, University of Queensland, Brisbane, Australia* - 6/2/2009 **

Other Talks:

  • Monday Midday Meeting (Brisbane, Australia) - 24/11/2008
  • Computational Biology Forum (Brisbane, Australia) - 2008
  • Structural Biology Forum (Brisbane, Australia) - 2006,2007,2008

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Posters:

  • 2007 - AB Noske, GP Morgan and BJ Marsh. Methods for more accurate/efficient 3D reconstruction of mammalian cells by electron tomography (ET). American Society for Cell Biology (ASCB) annual meeting, Washington, DC, USA - 6/12/2007 **
  • 2009 - BJ Marsh, AB Noske, GP Morgan, O Cairncross, MA Ragan, G Johnson. Structure-function complexity of the insulin secretory pathway revealed from comparative whole cell maps of insulin-secreting beta cells reconstructed in 3D at 10-15nm resolution using cellular electron tomography. American Society for Cell Biology (ASCB) annual meeting, San Diego, CA, USAAmerican Society
  • 2009 - G Johnson, AB Noske, M Al-Alusi, GP Morgan, BJ Marsh, D Goodsell, A Olson. Automated visualization of subcellular environments: electron tomography in the proteomics era. American Society for Cell Biology (ASCB) annual meeting, San Diego, CA, USA

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Unpublished Works:

In this sections are two of my first attemps at scientific writing during my honours year at James Cook University.

  • 2004 Dynamic Range Queries in Vector Space - This literature review was the first piece of scientific writing I've ever done, and, like most first attempt, was nothing special.
    .....(download .doc)
  • 2004 Efficient Algorithms for Molecular Dynamics Simulations and Other Dynamic Spatial Join Queries - This is my honours project, which help earn me a class one. In this paper I proposed and tested several new and existing methods of speeding up pair-wise particle interaction. I do have a warning though that there is a significant mistake in results I need to fix (when I get the chance) before I consider publishing it.
    .....(download .pdf)

 

 

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